Domain ID e3d4rF1

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Single hybrid motif
  • F: DUF2118
UID: 000344971
Type: Automatic domain
Parent: e3d4rA1
Range: F:83-150
Ligands: EDO
PDB: 3d4r
PDB Description: Domain of Unknown Function from the Pfam-B_34464 Family
UniProt: Q6M171
Species: Methanococcus maripaludis

Structure of domain e3d4rF1

Domains in the same chain:

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e3d4rF2 F:-7-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rF1 F:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Domains in the same PDB:

e3d4rA2 A:1-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rA1 A:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3d4rB2 B:-6-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rB1 B:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3d4rC2 C:-7-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rC1 C:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3d4rD2 D:-7-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rD1 D:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3d4rE2 E:-2-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rE1 E:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3d4rF2 F:-7-82 N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family N-terminal domain in DUF2118 family
e3d4rF1 F:83-150 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Structural contacts of domain e3d4rF1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3d4rE2 F:x,y,z->E:X,Y,Z N-terminal domain in DUF2118 family Interaction Interface Pymol
e3d4rE1 F:x,y,z->E:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3d4rD2 F:x,y,z->D:X-1/2,-Y+1/2,-Z N-terminal domain in DUF2118 family Interaction Interface Pymol
e3d4rD1 F:x,y,z->D:X-1/2,-Y+1/2,-Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3d4rC1 F:x,y,z->C:X-1/2,-Y+1/2,-Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol