Domain ID e3d5aX8

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  • A: a+b two layers
  • X: dsRBD-like
  • H: Peptidyl-tRNA hydrolase domain-like
  • T: Peptidyl-tRNA hydrolase domain-like
  • F: Unmapped domains
UID: 001407465
Type: Automatic domain
Parent: e1gqeA4
Range: X:289-354
Ligands: MG
PDB: 3d5a
PDB Description:
Hsap BLAST neighbor: Q9UGC7
Species:

Structure of domain e3d5aX8

Domains in the same chain:

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e3d5aX7 X:1-98 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e3d5aX6 X:99-205 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e3d5aX1 X:206-288 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e3d5aX8 X:289-354 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Domains in the same PDB:

e3d5aC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3d5aC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3d5aE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3d5aE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3d5aF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3d5aG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3d5aH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3d5aH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3d5aJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3d5aK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3d5aL1 L:4-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3d5aN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3d5aO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3d5aP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3d5aR1 R:19-88 HTH HTH tri-helical
e3d5aT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3d5aX7 X:1-98 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e3d5aX6 X:99-205 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e3d5aX1 X:206-288 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e3d5aX8 X:289-354 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e3d5aX8 of H-group "Peptidyl-tRNA hydrolase domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3d5aL1 X:x,y,z->L:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol