Domain ID e3d5cL1

Download files:
  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000349491
Type: Automatic domain
Parent: e2uubL1
Range: L:4-127
Ligands: MG
PDB: 3d5c
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3d5cL1

Domains in the same chain:

Download Pymol

e3d5cL1 L:4-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3d5cC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3d5cC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3d5cE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3d5cE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3d5cF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3d5cG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3d5cH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3d5cH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3d5cJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3d5cK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3d5cL1 L:4-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3d5cN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3d5cO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3d5cP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3d5cR1 R:19-88 HTH HTH tri-helical
e3d5cT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3d5cX9 X:1-100 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e3d5cX6 X:101-205 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e3d5cX7 X:206-288 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e3d5cX8 X:289-354 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e3d5cL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3d5cX8 L:X,Y,Z->X:x,y,z Peptidyl-tRNA hydrolase domain-like Interaction Interface Pymol
e3d5cH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol