Domain ID e3d5dF1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000349508
Type: Automatic domain
Parent: e1dmgA1
Range: F:6-207
Ligands: MG
PDB: 3d5d
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e3d5dF1

Domains in the same chain:

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e3d5dF1 F:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e3d5d01 0:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3d5d11 1:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3d5d21 2:1-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3d5d31 3:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3d5d41 4:36-65 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3d5d51 5:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3d5d61 6:9-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3d5d71 7:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3d5d81 8:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3d5dD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3d5dD2 D:127-272 SH3 SH3 SH3
e3d5dF1 F:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3d5dG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3d5dH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3d5dH2 H:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3d5dI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3d5dI1 I:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3d5dN1 N:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3d5dO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3d5dR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3d5dU1 U:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3d5dV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3d5dW1 W:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3d5dX1 X:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3d5dY2 Y:2-101 SH3 SH3 SH3
e3d5dZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3d5dZ2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3d5dF1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 F:X,Y,Z->P:x,y,z Ribosomal protein L4 Interaction Interface Pymol