Domain ID e3dblD4

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001873048
Type: Automatic domain
Parent: e1yovB4
Range: D:11-210,D:289-346
Ligands: ZN
PDB: 3dbl
PDB Description: NEDD8-activating enzyme E1 catalytic subunit
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e3dblD4

Domains in the same chain:

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e3dblD4 D:11-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dblD3 D:347-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e3dblA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblB2 B:11-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblB1 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dblB3 B:347-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dblC1 C:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblD4 D:11-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dblD3 D:347-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dblE1 E:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblF2 F:11-210,F:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblF1 F:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dblF3 F:347-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dblG1 G:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblH4 H:11-210,H:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dblH2 H:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dblH3 H:347-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dblI1 I:91-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dblJ1 J:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dblK1 K:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dblL1 L:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3dblD4 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dblC1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e3dblJ1 D:X,Y,Z->J:x,y,z Ubiquitin-related Interaction Interface Pymol
e3dblB2 D:x,y,z->B:X,Y,Z Rossmann-related Interaction Interface Pymol
e3dblB3 D:x,y,z->B:X,Y,Z E2-binding domain of E1 Interaction Interface Pymol
e3dblH2 D:X,Y,Z->H:x,y,z Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol