Domain ID e3dllY1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000088923
Type: Automatic domain
Parent: e2j0151
Range: Y:2-59
Ligands: ZN
PDB: 3dll
PDB Description: 50S ribosomal protein L32
UniProt: P49228
Species: Deinococcus radiodurans

Structure of domain e3dllY1

Domains in the same chain:

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e3dllY1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3dll11 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3dll21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3dll31 3:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3dll41 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3dllA2 A:32-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3dllA1 A:128-249 SH3 SH3 SH3
e3dllB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e3dllC1 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3dllD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3dllE1 E:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3dllE2 E:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3dllF1 F:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e3dllG1 G:30-166 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3dllH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3dllI1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3dllJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3dllK1 K:14-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3dllL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3dllM1 M:2-109 SH3 SH3 SH3
e3dllN1 N:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3dllO1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3dllP1 P:22-134 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3dllQ1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3dllR2 R:4-113 SH3 SH3 SH3
e3dllS1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3dllS2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3dllT1 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3dllU1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3dllV1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3dllW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3dllY1 Y:2-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3dllY1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dllP1 Y:x,y,z->P:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3dllK1 Y:x,y,z->K:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e3dllK1 Y:x,y,z->M:X-1/2,-Y+1/2,-Z+1/2 Prokaryotic ribosomal protein L17 Interaction Interface Pymol