ECOD: domain e3dm5A4

Domain ID e3dm5A4

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: SRP54

UID:	001159864
Type:	Automatic domain
Parent:	e1ls1A2
Range:	A:90-295
Ligands:	ACT GDP SO4
PDB:	3dm5
PDB Description:	Signal recognition 54 kDa protein
UniProt:	Q8U070
Hsap BLAST neighbor:	P61011
Species:	Pyrococcus furiosus

Domain
In chain context
In PDB context

Structure of domain e3dm5A4

Domains in the same chain:

Download Pymol

e3dm5A6	A:1-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e3dm5A4	A:90-295	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3dm5A5	A:296-345,A:365-435	HTH	HTH	tri-helical

Domains in the same PDB:

Structural contacts of domain e3dm5A4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3dm5A5	A:x,y,z->A:-X,-Y-1,Z	HTH	Interaction Interface Pymol
e3dm5A5	A:-X,-Y-1,Z->A:x,y,z	HTH	Interaction Interface Pymol
e3dm5B6	A:-X,-Y-1,Z->B:x,y,z	Domain of the SRP/SRP receptor G-proteins	Interaction Interface Pymol
e3dm5B4	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3dm5B4	A:-X+1/2,Y-1/2,-Z+1/2->B:x,y,z	P-loop domains-related	Interaction Interface Pymol