| UID: | 001212323 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1ls1A2 |
| Range: | B:90-295 |
| Ligands: | ACT GDP SO4 |
| PDB: | 3dm5 |
| PDB Description: | Signal recognition 54 kDa protein |
| UniProt: | Q8U070 |
| Hsap BLAST neighbor: | P61011 |
| Species: | Pyrococcus furiosus |
Structure of domain e3dm5B4
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e3dm5B4 of H-group "P-loop domains-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3dm5B6 | B:x,y,z->B:-X,-Y-1,Z | Domain of the SRP/SRP receptor G-proteins | Interaction Interface Pymol |
| e3dm5B5 | B:x,y,z->B:-X,-Y-1,Z | HTH | Interaction Interface Pymol |
| e3dm5B4 | B:x,y,z->B:-X,-Y-1,Z | P-loop domains-related | Interaction Interface Pymol |
| e3dm5B4 | B:-X,-Y-1,Z->B:x,y,z | P-loop domains-related | Interaction Interface Pymol |
| e3dm5B5 | B:-X,-Y-1,Z->B:x,y,z | HTH | Interaction Interface Pymol |
| e3dm5B6 | B:-X,-Y-1,Z->B:x,y,z | Domain of the SRP/SRP receptor G-proteins | Interaction Interface Pymol |
| e3dm5A6 | B:x,y,z->A:-X,-Y-1,Z | Domain of the SRP/SRP receptor G-proteins | Interaction Interface Pymol |
| e3dm5A4 | B:x,y,z->A:X,Y,Z | P-loop domains-related | Interaction Interface Pymol |
| e3dm5A4 | B:x,y,z->A:-X+1/2,Y-1/2,-Z+1/2 | P-loop domains-related | Interaction Interface Pymol |
