Domain ID e3dv0A1

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: E1_dh
UID: 000355287
Type: Automatic domain
Parent: e2bfdA1
Range: A:4-367
Ligands: MG PYR TPW
PDB: 3dv0
PDB Description: PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA
UniProt: P21873
Hsap BLAST neighbor: P12694
Species:

Structure of domain e3dv0A1

Domains in the same chain:

e3dv0A1 A:4-367 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e3dv0A1 A:4-367 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0B4 B:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0B3 B:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dv0C1 C:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0D4 D:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0D3 D:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dv0E1 E:4-367 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0F4 F:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0F3 F:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dv0G1 G:4-367 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0H4 H:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dv0H3 H:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dv0I1 I:127-169 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
e3dv0J1 J:129-169 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

Structural contacts of domain e3dv0A1 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dv0C1 A:X,Y,Z->C:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dv0B3 A:X,Y,Z->B:x,y,z TK C-terminal domain-like Interaction Interface Pymol
e3dv0B4 A:X,Y,Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dv0D3 A:X,Y,Z->D:x,y,z TK C-terminal domain-like Interaction Interface Pymol
e3dv0D4 A:X,Y,Z->D:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dv0C1 A:x,y,z->C:X-1,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dv0I1 A:x,y,z->I:X,Y,Z-1 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Interaction Interface Pymol
e3dv0E1 A:-X,Y-1/2,-Z->E:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dv0F4 A:X,Y,Z->F:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol