ECOD: domain e3dymA3

Domain ID e3dymA3

A: beta sandwiches
X: jelly-roll
H: Galactose-binding domain-like
T: Galactose-binding domain-like
F: Glyco_hydro_2_N

UID:	000169297
Type:	Automatic domain
Parent:	e1jz8A1
Range:	A:13-219
Ligands:	DMS MG NA
PDB:	3dym
PDB Description:	Beta-galactosidase
UniProt:	P00722
Species:

Domains in the same chain:

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Domains in the same PDB:

e3dymA3	A:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e3dymA4	A:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymA1	A:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3dymA5	A:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymA2	A:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e3dymB1	B:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e3dymB2	B:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymB5	B:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3dymB3	B:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymB4	B:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e3dymC1	C:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e3dymC2	C:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymC5	C:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3dymC3	C:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymC4	C:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e3dymD1	D:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e3dymD2	D:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD5	D:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3dymD3	D:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD4	D:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich

Structural contacts of domain e3dymA3 of H-group "Galactose-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3dymD5	A:X,Y,Z->D:x,y,z	TIM barrels	Interaction Interface Pymol
e3dymD2	A:X,Y,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3dymD1	A:X,Y,Z->D:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e3dymD2	A:X-1/2,-Y-1/2,-Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3dymB4	A:x,y,z->B:-X,Y-1/2,-Z-1/2	supersandwich	Interaction Interface Pymol