Domain ID e3dymD5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000350901
Type: Automatic domain
Parent: e1jz8A5
Range: D:334-625
Ligands: DMS MG NA
PDB: 3dym
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species:

Structure of domain e3dymD5

Domains in the same chain:

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e3dymD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dymD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dymD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3dymA3 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dymA4 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymA1 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dymA5 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymA2 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dymB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dymB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dymB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dymC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dymC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dymC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dymD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dymD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dymD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dymD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3dymD5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dymA1 D:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3dymA3 D:x,y,z->A:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e3dymA4 D:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3dymC5 D:x,y,z->C:X,Y,Z TIM barrels Interaction Interface Pymol