ECOD: domain e3eq1B1

Domain ID e3eq1B1

A: a+b two layers
X: dsRBD-like
H: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
T: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
F: Porphobil_deamC

UID:	001391453
Type:	Automatic domain
Parent:	e1pdaA1
Range:	B:239-356
Ligands:	DPM SO4
PDB:	3eq1
PDB Description:	Porphobilinogen deaminase
UniProt:	P08397
Hsap BLAST neighbor:	P08397
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3eq1B1

Domains in the same chain:

Download Pymol

e3eq1B2	B:19-55,B:77-117,B:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B3	B:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B1	B:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Domains in the same PDB:

e3eq1A2	A:19-55,A:77-117,A:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A3	A:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A1	A:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
e3eq1B2	B:19-55,B:77-117,B:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B3	B:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B1	B:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Structural contacts of domain e3eq1B1 of H-group "Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3eq1B2	B:x,y,z->B:X-1/2,-Y+1/2,-Z+1	Periplasmic binding protein-like II	Interaction Interface Pymol
e3eq1B1	B:x,y,z->B:X-1/2,-Y+1/2,-Z+1	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Interaction Interface Pymol
e3eq1B1	B:X-1/2,-Y+1/2,-Z+1->B:x,y,z	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Interaction Interface Pymol