ECOD: domain e3eq1A2

Domain ID e3eq1A2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Porphobil_deam

UID:	001520249
Type:	Automatic domain
Parent:	e1pdaA4
Range:	A:19-55,A:77-117,A:218-238
Ligands:	DPM SO4
PDB:	3eq1
PDB Description:	Porphobilinogen deaminase
UniProt:	P08397
Hsap BLAST neighbor:	P08397
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3eq1A2

Domains in the same chain:

Download Pymol

e3eq1A2	A:19-55,A:77-117,A:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A3	A:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A1	A:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Domains in the same PDB:

e3eq1A2	A:19-55,A:77-117,A:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A3	A:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1A1	A:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
e3eq1B2	B:19-55,B:77-117,B:218-238	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B3	B:118-217	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3eq1B1	B:239-356	dsRBD-like	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Structural contacts of domain e3eq1A2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3eq1B3	A:X,Y,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3eq1A1	A:x,y,z->A:X-1/2,-Y+1/2,-Z	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	Interaction Interface Pymol