Domain ID e3f1eE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000354359
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
Ligands: MG
PDB: 3f1e
PDB Description:
Species:

Structure of domain e3f1eE2

Domains in the same chain:

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e3f1eE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3f1eE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e3f1eC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3f1eC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3f1eE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3f1eE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3f1eF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3f1eG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3f1eH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3f1eH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3f1eJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3f1eK1 K:11-124 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f1eL1 L:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3f1eN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3f1eO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3f1eP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3f1eR1 R:19-88 HTH HTH tri-helical
e3f1eT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3f1eX3 X:17-121 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e3f1eX5 X:124-226 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e3f1eX6 X:227-315 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e3f1eX7 X:316-378 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e3f1eE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3f1eH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e3f1eH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol