Domain ID e3finN1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000358454
Type: Automatic domain
Parent: e4v19N1
Range: N:1-139
PDB: 3fin
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e3finN1

Domains in the same chain:

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e3finN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3fin01 0:1-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3fin11 1:8-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3fin21 2:12-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3fin31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3fin41 4:1-50 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3fin51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3fin61 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3fin71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3fin81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3fin91 9:2-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3finC4 C:18-67,C:160-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3finD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3finD2 D:127-273 SH3 SH3 SH3
e3finF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3finG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3finH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3finH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3finI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3finI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3finL2 L:2-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3finL1 L:70-139 HTH HTH Ribosomal protein L11, C-terminal domain
e3finN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3finO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3finR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3finU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3finV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3finW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3finX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3finY1 Y:2-102 SH3 SH3 SH3
e3finZ1 Z:3-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3finZ2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3finN1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3finU1 N:x,y,z->U:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol
e3finV1 N:x,y,z->V:X,Y,Z Ribosomal protein L21p Interaction Interface Pymol
e3finV1 N:X,Y,Z->E:x,y,z Ribosomal protein L21p Interaction Interface Pymol