Domain ID e3floE1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: DPOA2_OB
UID: 000364886
Type: Automatic domain
Parent: e4y97C1
Range: E:248-368
Ligands: SO4
PDB: 3flo
PDB Description: DNA polymerase alpha subunit B
UniProt: P38121
Hsap BLAST neighbor: Q14181
Species: Saccharomyces cerevisiae

Structure of domain e3floE1

Domains in the same chain:

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e3floE1 E:248-368 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3floE2 E:369-580,E:606-705 Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases

Domains in the same PDB:

e3floA3 A:248-368 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3floA2 A:369-580,A:606-705 Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases
e3floB1 B:1273-1344 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floB2 B:1345-1452 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floC1 C:248-368 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3floC2 C:369-580,C:606-705 Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases
e3floD1 D:1273-1344 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floD2 D:1345-1452 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floE1 E:248-368 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3floE2 E:369-580,E:606-705 Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases
e3floF1 F:1273-1344 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floF2 F:1345-1452 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floG3 G:248-368 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3floG2 G:369-580,G:606-705 Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases
e3floH1 H:1273-1344 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha
e3floH2 H:1345-1452 Rubredoxin-like Zinc finger domain of DNA polymerase-alpha Zinc finger domain of DNA polymerase-alpha

Structural contacts of domain e3floE1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3floF2 E:X,Y,Z->F:x,y,z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol
e3floF1 E:X,Y,Z->F:x,y,z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol
e3floF1 E:x,y,z->A:X,Y,Z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol
e3floF1 E:x,y,z->F:X-1,Y,Z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol
e3floF2 E:x,y,z->F:X-1,Y,Z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol
e3floB2 E:X,Y,Z->B:x,y,z Zinc finger domain of DNA polymerase-alpha Interaction Interface Pymol