Domain ID e3glgA3

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DNA_pol3_delta
UID: 000364152
Type: Automatic domain
Parent: e1jqlB1
Range: A:1-141
PDB: 3glg
PDB Description: DNA polymerase III subunit delta
UniProt: P28630
Species:

Structure of domain e3glgA3

Domains in the same chain:

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e3glgA3 A:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgA2 A:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e3glgA1 A:211-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3glgA3 A:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgA2 A:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e3glgA1 A:211-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgB1 B:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgB5 B:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgB4 B:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgC3 C:4-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgC5 C:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgC4 C:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgD2 D:2-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgD5 D:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgD4 D:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgE3 E:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgE1 E:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e3glgE2 E:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgF3 F:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgF2 F:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e3glgF1 F:211-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgG1 G:-9-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgG3 G:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgG2 G:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgH2 H:4-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgH5 H:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgH4 H:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgI2 I:2-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgI5 I:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3glgI4 I:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3glgJ4 J:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3glgJ3 J:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e3glgJ1 J:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Structural contacts of domain e3glgA3 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jqlB1 A:X,Y,Z->B:x,y,z P-loop domains-related Interaction Interface Pymol
e1jqlB1 A:x,y,z->C:X-1,Y,Z P-loop domains-related Interaction Interface Pymol
e3glgC5 A:x,y,z->C:X-1,Y,Z Histone-related Interaction Interface Pymol
e3glgC5 A:x,y,z->D:X-1,Y,Z Histone-related Interaction Interface Pymol
e3glgJ4 A:-X+1/2,-Y,Z-1/2->J:x,y,z P-loop domains-related Interaction Interface Pymol