ECOD: domain e3glgJ4

Domain ID e3glgJ4

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: DNA_pol3_delta2

UID:	001578787
Type:	Automatic domain
Parent:	e1a5tA5
Range:	J:1-165
Ligands:	ADP BEF MG ZN
PDB:	3glg
PDB Description:	DNA polymerase III subunit delta'
UniProt:	P28631
Species:

Domains in the same chain:

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e3glgJ4	J:1-165	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgJ3	J:166-207	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgJ1	J:208-334	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3glgA3	A:1-141	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgA2	A:142-210	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgA1	A:211-333	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgB1	B:5-178	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgB5	B:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgB4	B:243-368	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgC3	C:4-178	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgC5	C:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgC4	C:243-368	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgD2	D:2-178	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgD5	D:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgD4	D:243-363	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgE3	E:1-165	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgE1	E:166-207	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgE2	E:208-334	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgF3	F:1-141	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgF2	F:142-210	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgF1	F:211-333	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgG1	G:-9-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgG3	G:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgG2	G:243-368	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgH2	H:4-178	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgH5	H:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgH4	H:243-368	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgI2	I:2-178	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgI5	I:177-243	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgI4	I:243-363	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e3glgJ4	J:1-165	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3glgJ3	J:166-207	Histone-like	Histone-related	AAA+ ATPase lid domain
e3glgJ1	J:208-334	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain

Structural contacts of domain e3glgJ4 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3glgI5	J:x,y,z->I:X,Y,Z	Histone-related	Interaction Interface Pymol
e3glgI5	J:x,y,z->I:X,Y,Z	Histone-related	Interaction Interface Pymol
e3glgI4	J:x,y,z->I:X,Y,Z	DNA polymerase III clamp loader subunits, C-terminal domain	Interaction Interface Pymol
e3glgI4	J:X-1,Y,Z->G:x,y,z	DNA polymerase III clamp loader subunits, C-terminal domain	Interaction Interface Pymol
e3glgI4	J:x,y,z->B:-X+1/2,-Y,Z-1/2	DNA polymerase III clamp loader subunits, C-terminal domain	Interaction Interface Pymol
e3glgA3	J:x,y,z->A:-X+1/2,-Y,Z-1/2	P-loop domains-related	Interaction Interface Pymol