Domain ID e3gliJ2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DNA_pol3_delta2
UID: 001772533
Type: Automatic domain
Parent: e1a5tA5
Range: J:1-165
Ligands: ADP BEF MG ZN
PDB: 3gli
PDB Description: DNA polymerase III subunit delta'
UniProt: P28631
Species:

Structure of domain e3gliJ2

Domains in the same chain:

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e3gliJ2 J:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliJ4 J:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e3gliJ3 J:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3gliA3 A:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliA2 A:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e3gliA1 A:211-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliB3 B:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliB5 B:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliB4 B:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliC3 C:4-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliC5 C:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliC4 C:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliD2 D:2-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliD5 D:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliD4 D:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliE4 E:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliE1 E:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e3gliE3 E:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliF3 F:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliF2 F:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e3gliF1 F:211-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliG5 G:-9-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliG3 G:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliG4 G:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliH3 H:4-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliH5 H:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliH4 H:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliI3 I:2-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliI5 I:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e3gliI4 I:243-363 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3gliJ2 J:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gliJ4 J:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e3gliJ3 J:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Structural contacts of domain e3gliJ2 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gliI5 J:x,y,z->I:X,Y,Z Histone-related Interaction Interface Pymol
e3gliI4 J:x,y,z->I:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3gliI4 J:x,y,z->I:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3gliI4 J:X-1,Y,Z->G:x,y,z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3gliI4 J:x,y,z->B:-X+1/2,-Y,Z-1/2 DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3gliA3 J:x,y,z->A:-X+1/2,-Y,Z-1/2 P-loop domains-related Interaction Interface Pymol