Domain ID e3gqbD1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: ATP-synt_ab_N
UID: 000377837
Type: Automatic domain
Parent: e2jdiA1
Range: D:5-80
PDB: 3gqb
PDB Description: V-type ATP synthase beta chain
UniProt: Q56404
Hsap BLAST neighbor: P21281
Species:

Structure of domain e3gqbD1

Domains in the same chain:

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e3gqbD1 D:5-80 cradle loop barrel RIFT-related Alanine racemase-C
e3gqbD4 D:81-365 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gqbD5 D:366-464 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e3gqbA1 A:1-70 cradle loop barrel RIFT-related Alanine racemase-C
e3gqbA4 A:70-111,A:184-436 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gqbA3 A:109-183 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3gqbA5 A:438-578 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3gqbB1 B:5-80 cradle loop barrel RIFT-related Alanine racemase-C
e3gqbB4 B:81-365 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gqbB5 B:366-464 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3gqbC1 C:1-70 cradle loop barrel RIFT-related Alanine racemase-C
e3gqbC4 C:70-111,C:184-436 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gqbC3 C:109-183 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3gqbC5 C:438-578 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e3gqbD1 D:5-80 cradle loop barrel RIFT-related Alanine racemase-C
e3gqbD4 D:81-365 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3gqbD5 D:366-464 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Structural contacts of domain e3gqbD1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gqbC1 D:x,y,z->C:X,Y,Z RIFT-related Interaction Interface Pymol
e3gqbC1 D:-Y,X-Y+1,Z->C:x,y,z RIFT-related Interaction Interface Pymol
e3gqbB1 D:x,y,z->B:Y-1,X,-Z+1 RIFT-related Interaction Interface Pymol