Domain ID e3gqcD1

Download files:
  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH_1
UID: 000363456
Type: Automatic domain
Parent: e1t3nA1
Range: D:637-701
Ligands: MG
PDB: 3gqc
PDB Description: DNA REPAIR PROTEIN REV1
UniProt: Q9UBZ9
Hsap BLAST neighbor: Q9UBZ9
Species: Homo sapiens

Structure of domain e3gqcD1

Domains in the same chain:

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e3gqcD3 D:346-389,D:416-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gqcD1 D:637-701 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gqcD2 D:702-827 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3gqcA1 A:344-391,A:416-641 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gqcA2 A:642-706 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gqcA3 A:707-828 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3gqcB3 B:344-391,B:416-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gqcB1 B:637-701 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gqcB2 B:702-828 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3gqcC4 C:344-385,C:416-472,C:500-641 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gqcC3 C:642-706 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gqcC2 C:707-827 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3gqcD3 D:346-389,D:416-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gqcD1 D:637-701 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gqcD2 D:702-827 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3gqcD1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gqcC3 D:x,y,z->C:X,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol
e3gqcC4 D:x,y,z->C:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3gqcD3 D:X-1,Y,Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol