ECOD: domain e3gtkC4

Domain ID e3gtkC4

A: a+b complex topology
X: Ribosomal protein TL5/L25 C-terminal domain-like
H: Insert subdomain of RNA polymerase alpha subunit
T: Insert subdomain of RNA polymerase alpha subunit
F: RNA_pol_A_bac

UID:	001258728
Type:	Automatic domain
Parent:	e1twfC2
Range:	C:42-172
Ligands:	ZN
PDB:	3gtk
PDB Description:	DNA-directed RNA polymerase II subunit RPB3
UniProt:	P16370
Hsap BLAST neighbor:	P19387
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e3gtkC3	C:2-41,C:173-272	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3gtkC4	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit

Domains in the same PDB:

Structural contacts of domain e3gtkC4 of H-group "Insert subdomain of RNA polymerase alpha subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gtkK1	C:X,Y,Z->K:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e3gtkB3	C:x,y,z->B:X,Y,Z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3gtkB7	C:x,y,z->B:X,Y,Z	RIFT-related	Interaction Interface Pymol
e3gtkB4	C:x,y,z->B:X,Y,Z	barrel domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e3gtkJ1	C:X,Y,Z->J:x,y,z	RPB10	Interaction Interface Pymol
e3gtkL1	C:X,Y,Z->L:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e3gtkA1	C:x,y,z->A:-X,Y,-Z	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	Interaction Interface Pymol

e3gtkA7	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3gtkA4	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e3gtkA1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3gtkA3	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3gtkA8	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3gtkA6	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3gtkA5	A:1060-1102,A:1301-1451	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3gtkA9	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3gtkA2	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3gtkB5	B:20-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3gtkB6	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3gtkB2	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3gtkB4	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3gtkB7	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e3gtkB3	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3gtkB1	B:1098-1220	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3gtkC3	C:2-41,C:173-272	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3gtkC4	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e3gtkE2	E:1-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e3gtkE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e3gtkF1	F:71-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e3gtkH1	H:1-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3gtkI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3gtkI2	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3gtkJ1	J:1-65	HTH	RPB10	RPB10
e3gtkK1	K:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3gtkL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related