Domain ID e3gvkA1

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  • A: beta duplicates or obligate multimers
  • X: beta-propeller-like
  • H: beta-propeller
  • T: 6-bladed
  • F: End_beta_propel
UID: 001392178
Type: Automatic domain
Parent: e1v0eA4
Range: A:312-421,A:511-760
Ligands: NA
PDB: 3gvk
PDB Description: Endo-N-acetylneuraminidase
UniProt: Q04830
Species: Enterobacteria phage K1F

Structure of domain e3gvkA1

Domains in the same chain:

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e3gvkA3 A:267-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkA1 A:312-421,A:511-760 beta-propeller-like beta-propeller 6-bladed
e3gvkA2 A:422-510 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkA4 A:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain

Domains in the same PDB:

e3gvkA3 A:267-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkA1 A:312-421,A:511-760 beta-propeller-like beta-propeller 6-bladed
e3gvkA2 A:422-510 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkA4 A:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain
e3gvkB1 B:245-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkB4 B:312-422,B:512-760 beta-propeller-like beta-propeller 6-bladed
e3gvkB3 B:423-511 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkB2 B:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain
e3gvkC1 C:245-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkC4 C:312-422,C:512-760 beta-propeller-like beta-propeller 6-bladed
e3gvkC3 C:423-511 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkC2 C:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain

Structural contacts of domain e3gvkA1 of H-group "beta-propeller":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gvkC2 A:X,Y,Z->C:x,y,z Phage tail fiber protein trimerization domain Interaction Interface Pymol
e3gvkC4 A:X,Y,Z->C:x,y,z beta-propeller Interaction Interface Pymol
e3gvkC1 A:X,Y,Z->C:x,y,z Pectin lyase-like Interaction Interface Pymol
e3gvkB3 A:X,Y,Z->B:x,y,z RIFT-related Interaction Interface Pymol
e3gvkB4 A:X,Y,Z->B:x,y,z beta-propeller Interaction Interface Pymol
e3gvkB2 A:X,Y,Z->B:x,y,z Phage tail fiber protein trimerization domain Interaction Interface Pymol
e3gvkC3 A:-X,Y-1/2,-Z-1/2->C:x,y,z RIFT-related Interaction Interface Pymol
e3gvkB3 A:X-1/2,-Y+1/2,-Z->B:x,y,z RIFT-related Interaction Interface Pymol