Domain ID e3gvkC1

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  • A: beta duplicates or obligate multimers
  • X: Single-stranded right-handed beta-helix
  • H: Pectin lyase-like
  • T: Pectin lyase-like
  • F: End_N_terminal
UID: 001339005
Type: Automatic domain
Parent: e1v0eA5
Range: C:245-311
PDB: 3gvk
PDB Description: Endo-N-acetylneuraminidase
UniProt: Q04830
Species: Enterobacteria phage K1F

Structure of domain e3gvkC1

Domains in the same chain:

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e3gvkC1 C:245-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkC4 C:312-422,C:512-760 beta-propeller-like beta-propeller 6-bladed
e3gvkC3 C:423-511 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkC2 C:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain

Domains in the same PDB:

e3gvkA3 A:267-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkA1 A:312-421,A:511-760 beta-propeller-like beta-propeller 6-bladed
e3gvkA2 A:422-510 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkA4 A:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain
e3gvkB1 B:245-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkB4 B:312-422,B:512-760 beta-propeller-like beta-propeller 6-bladed
e3gvkB3 B:423-511 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkB2 B:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain
e3gvkC1 C:245-311 Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like
e3gvkC4 C:312-422,C:512-760 beta-propeller-like beta-propeller 6-bladed
e3gvkC3 C:423-511 cradle loop barrel RIFT-related Alanine racemase-C
e3gvkC2 C:761-910 Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain

Structural contacts of domain e3gvkC1 of H-group "Pectin lyase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gvkB1 C:x,y,z->B:X,Y,Z Pectin lyase-like Interaction Interface Pymol
e3gvkA3 C:x,y,z->A:X,Y,Z Pectin lyase-like Interaction Interface Pymol
e3gvkA1 C:x,y,z->A:X,Y,Z beta-propeller Interaction Interface Pymol
e3gvkA4 C:x,y,z->A:X,Y,Z Phage tail fiber protein trimerization domain Interaction Interface Pymol