Domain ID e3gznD2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001873513
Type: Automatic domain
Parent: e1yovB4
Range: D:33-231,D:310-367
Ligands: B39 ZN
PDB: 3gzn
PDB Description: NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e3gznD2

Domains in the same chain:

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e3gznD2 D:33-231,D:310-367 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3gznD3 D:232-309 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3gznD1 D:367-462 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e3gznA1 A:15-541 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3gznB2 B:33-231,B:310-367 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3gznB3 B:232-309 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3gznB1 B:367-462 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3gznC1 C:14-541 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3gznD2 D:33-231,D:310-367 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3gznD3 D:232-309 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3gznD1 D:367-462 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3gznI1 I:-2-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e3gznJ1 J:-2-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3gznD2 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gznC1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e3gznB2 D:x,y,z->B:-X,Y,-Z Rossmann-related Interaction Interface Pymol
e3gznA1 D:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol