ECOD: domain e3hpoA4

Domain ID e3hpoA4

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: DNA_polI_exo1

UID:	000393932
Type:	Automatic domain
Parent:	e2hhvA4
Range:	A:297-468
Ligands:	SO4 SUC
PDB:	3hpo
PDB Description:	DNA polymerase I, large fragment
Species:	Geobacillus stearothermophilus

Domain
In chain context
In PDB context

Structure of domain e3hpoA4

Domains in the same chain:

Download Pymol

e3hpoA4	A:297-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3hpoA2	A:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3hpoA3	A:643-667,A:792-876	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hpoA1	A:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3hpoA4	A:297-468	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3hpoA2	A:469-642	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3hpoA3	A:643-667,A:792-876	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hpoA1	A:668-791	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3hpoA4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3hpoA1	A:x,y,z->A:-X,Y-1/2,-Z+1/2	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3hpoA3	A:x,y,z->A:-X,Y-1/2,-Z+1/2	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol