Domain ID e3i4nK1

Download files:
  • A: a+b two layers
  • X: DCoH-like
  • H: RBP11-like subunits of RNA polymerase
  • T: RBP11-like subunits of RNA polymerase
  • F: RNA_pol_L_2
UID: 000372235
Type: Automatic domain
Parent: e1xppA1
Range: K:1-116
PDB: 3i4n
PDB Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
UniProt: P38902
Hsap BLAST neighbor: P52435
Species: Saccharomyces cerevisiae

Structure of domain e3i4nK1

Domains in the same chain:

Download Pymol

e3i4nK1 K:1-116 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase

Domains in the same PDB:

e3i4nA4 A:2-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3i4nA5 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e3i4nA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3i4nA9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3i4nA3 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3i4nA7 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3i4nA1 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3i4nA6 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3i4nA8 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3i4nB5 B:20-70,B:90-138,B:164-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3i4nB6 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3i4nB2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3i4nB4 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3i4nB3 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e3i4nB7 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3i4nB1 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3i4nC3 C:1-41,C:173-270 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3i4nC4 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3i4nD1 D:1-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3i4nE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e3i4nE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3i4nF1 F:68-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3i4nG4 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e3i4nG3 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3i4nH1 H:1-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3i4nI1 I:1-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3i4nI2 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3i4nJ1 J:1-65 HTH RPB10 RPB10
e3i4nK1 K:1-116 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3i4nL1 L:24-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3i4nK1 of H-group "RBP11-like subunits of RNA polymerase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i4nC3 K:x,y,z->C:X,Y,Z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e3i4nC4 K:x,y,z->C:X,Y,Z Insert subdomain of RNA polymerase alpha subunit Interaction Interface Pymol
e3i4nA5 K:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e3i4nA9 K:x,y,z->A:X,Y,Z first helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e3i4nB3 K:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol
e3i4nB1 K:x,y,z->B:X,Y,Z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3i4nH1 K:x,y,z->H:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol