Domain ID e3i55A1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_L2
UID: 000138384
Type: Automatic domain
Parent: e1vqoA1
Range: A:1-90
Ligands: MG SR
PDB: 3i55
PDB Description: 50S ribosomal protein L2P
UniProt: P20276
Hsap BLAST neighbor: P62917
Species: Haloarcula marismortui

Structure of domain e3i55A1

Domains in the same chain:

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e3i55A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3i55A2 A:91-237 SH3 SH3 SH3

Domains in the same PDB:

e3i5511 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3i5521 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3i5531 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3i55A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3i55A2 A:91-237 SH3 SH3 SH3
e3i55B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e3i55C1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3i55D1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3i55E1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3i55E2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3i55F1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e3i55G1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3i55H1 H:4-174 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3i55I1 I:66-135 HTH HTH Ribosomal protein L11, C-terminal domain
e3i55J1 J:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3i55K1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3i55L1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3i55M1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3i55N1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3i55O1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3i55P1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3i55P2 P:55-143 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3i55Q1 Q:1-95 SH3 SH3 SH3
e3i55R1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3i55S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3i55T1 T:1-119 SH3 SH3 SH3
e3i55U1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3i55V1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3i55W1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3i55X1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3i55Y1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3i55Z1 Z:34-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3i55A1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i55Z1 A:X,Y,Z->Z:x,y,z Rubredoxin-related Interaction Interface Pymol