Domain ID e3i9dH2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000389043
Type: Automatic domain
Parent: e1pkpA2
Range: H:74-155
Ligands: A C G MG U
PDB: 3i9d
PDB Description:
Species:

Structure of domain e3i9dH2

Domains in the same chain:

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e3i9dH1 H:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3i9dH2 H:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e3i9dF2 F:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3i9dF1 F:107-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3i9dH1 H:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3i9dH2 H:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3i9dI1 I:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3i9dJ1 J:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3i9dK1 K:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3i9dK2 K:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3i9dM1 M:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3i9dN1 N:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3i9dO1 O:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3i9dQ1 Q:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3i9dR1 R:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3i9dS1 S:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3i9dU1 U:19-88 HTH HTH tri-helical
e3i9dW1 W:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3i9dH2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i9dK2 H:X,Y,Z->K:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e3i9dK1 H:X,Y,Z->K:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol