Domain ID e3i9v33

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  • A: a+b two layers
  • X: 4Fe-4S ferredoxin
  • H: 4Fe-4S ferredoxin
  • T: 4Fe-4S ferredoxin
  • F: Nqo3_Fer4
UID: 001705725
Type: Automatic domain
Parent: e5lnk33
Range: 3:162-246
Ligands: CA MN SF4
PDB: 3i9v
PDB Description: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3
UniProt: Q56223
Hsap BLAST neighbor: P28331
Species:

Structure of domain e3i9v33

Domains in the same chain:

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e3i9v32 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3i9v34 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3i9v33 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3i9v37 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3i9v36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v31 3:686-777 cradle loop barrel RIFT-related double psi

Domains in the same PDB:

e3i9v13 1:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3i9v12 1:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3i9v11 1:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3i9v22 2:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3i9v21 2:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3i9v32 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3i9v34 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3i9v33 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3i9v37 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3i9v36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v31 3:686-777 cradle loop barrel RIFT-related double psi
e3i9v42 4:26-63,4:378-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9v43 4:64-106,4:305-377 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9v41 4:107-304 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3i9v51 5:1-196 Nqo5-like Nqo5-like Nqo5-like
e3i9v61 6:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3i9v71 7:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3i9v91 9:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3i9vA3 A:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3i9vA2 A:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3i9vA1 A:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3i9vB2 B:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3i9vB1 B:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3i9vC4 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3i9vC9 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3i9vC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3i9vC10 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3i9vC6 C:305-379,C:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9vC5 C:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9vC8 C:686-777 cradle loop barrel RIFT-related double psi
e3i9vD5 D:26-64,D:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD4 D:65-107,D:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD6 D:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3i9vE1 E:1-196 Nqo5-like Nqo5-like Nqo5-like
e3i9vF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3i9vG1 G:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3i9vH1 H:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like

Structural contacts of domain e3i9v33 of H-group "4Fe-4S ferredoxin":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i9v13 3:x,y,z->1:X,Y,Z Nqo1 FMN-binding domain-like Interaction Interface Pymol
e3i9v11 3:x,y,z->1:X,Y,Z Nqo1C-terminal domain-like Interaction Interface Pymol
e3i9v51 3:X,Y,Z->5:x,y,z Nqo5-like Interaction Interface Pymol
e3i9v71 3:X,Y,Z->7:x,y,z Frataxin-like Interaction Interface Pymol
e3i9v43 3:X,Y,Z->4:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3i9v91 3:X,Y,Z->9:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol
e3i9v22 3:x,y,z->2:X,Y,Z NQO2 helical bundle domain Interaction Interface Pymol