ECOD: domain e3i9vD4

Domain ID e3i9vD4

A: a+b two layers
X: FAD-linked reductases, C-terminal domain-like
H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
F: Complex1_49kDa

UID:	001172862
Type:	Automatic domain
Parent:	e2fug43
Range:	D:65-107,D:301-373
Ligands:	MN SF4
PDB:	3i9v
PDB Description:	NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4
UniProt:	Q56220
Hsap BLAST neighbor:	O75306
Species:

Domains in the same chain:

Download Pymol

e3i9vD5	D:26-64,D:374-409	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD4	D:65-107,D:301-373	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD6	D:108-300	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit

Domains in the same PDB:

e3i9v13	1:2-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e3i9v12	1:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e3i9v11	1:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e3i9v22	2:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e3i9v21	2:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e3i9v32	3:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3i9v34	3:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e3i9v33	3:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e3i9v37	3:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e3i9v36	3:305-379,3:542-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v35	3:375-541	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9v31	3:686-777	cradle loop barrel	RIFT-related	double psi
e3i9v42	4:26-63,4:378-409	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9v43	4:64-106,4:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9v41	4:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3i9v51	5:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e3i9v61	6:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3i9v71	7:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like
e3i9v91	9:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e3i9vA3	A:2-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e3i9vA2	A:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e3i9vA1	A:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e3i9vB2	B:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e3i9vB1	B:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e3i9vC4	C:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3i9vC9	C:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e3i9vC7	C:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e3i9vC10	C:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e3i9vC6	C:305-379,C:542-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9vC5	C:375-541	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3i9vC8	C:686-777	cradle loop barrel	RIFT-related	double psi
e3i9vD5	D:26-64,D:374-409	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD4	D:65-107,D:301-373	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3i9vD6	D:108-300	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3i9vE1	E:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e3i9vF1	F:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3i9vG1	G:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e3i9vH1	H:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like

Structural contacts of domain e3i9vD4 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3i9vE1	D:X,Y,Z->E:x,y,z	Nqo5-like	Interaction Interface Pymol
e3i9vG1	D:X,Y,Z->G:x,y,z	4Fe-4S ferredoxin	Interaction Interface Pymol
e3i9vF1	D:X,Y,Z->F:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e3i9vC7	D:x,y,z->C:X,Y,Z	4Fe-4S ferredoxin	Interaction Interface Pymol
e3i9vC10	D:x,y,z->C:X,Y,Z	Formate dehydrogenase/DMSO reductase, domain 1	Interaction Interface Pymol
e3i9vC9	D:x,y,z->C:X,Y,Z	iron-sulfur center-binding helical hairpin	Interaction Interface Pymol
e3i9vH1	D:X,Y,Z->H:x,y,z	Frataxin-like	Interaction Interface Pymol