Domain ID e3iam37

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  • A: a+b two layers
  • X: 4Fe-4S ferredoxin
  • H: 4Fe-4S ferredoxin
  • T: 4Fe-4S ferredoxin
  • F: Nqo3_Fer4
UID: 001196123
Type: Automatic domain
Parent: e2fug33
Range: 3:162-246
Ligands: CA MG SF4
PDB: 3iam
PDB Description: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3
UniProt: Q56223
Hsap BLAST neighbor: P28331
Species:

Structure of domain e3iam37

Domains in the same chain:

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e3iam34 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iam39 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iam37 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iam310 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iam36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iam35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iam38 3:686-777 cradle loop barrel RIFT-related double psi

Domains in the same PDB:

e3iam13 1:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3iam12 1:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3iam11 1:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3iam22 2:2-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3iam21 2:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3iam34 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iam39 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iam37 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iam310 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iam36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iam35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iam38 3:686-777 cradle loop barrel RIFT-related double psi
e3iam46 4:25-64,4:379-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iam45 4:65-111,4:313-378 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iam44 4:108-312 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3iam51 5:1-196 Nqo5-like Nqo5-like Nqo5-like
e3iam61 6:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3iam71 7:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3iam91 9:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iamA3 A:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3iamA2 A:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3iamA1 A:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3iamB2 B:2-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3iamB1 B:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3iamC4 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iamC9 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iamC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iamC10 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iamC6 C:305-379,C:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iamC5 C:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iamC8 C:686-777 cradle loop barrel RIFT-related double psi
e3iamD6 D:25-64,D:379-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iamD5 D:65-111,D:313-378 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iamD4 D:108-312 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3iamE1 E:1-196 Nqo5-like Nqo5-like Nqo5-like
e3iamF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3iamG1 G:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iamH1 H:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like

Structural contacts of domain e3iam37 of H-group "4Fe-4S ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3iam13 3:x,y,z->1:X,Y,Z Nqo1 FMN-binding domain-like Interaction Interface Pymol
e3iam11 3:x,y,z->1:X,Y,Z Nqo1C-terminal domain-like Interaction Interface Pymol
e3iam51 3:X,Y,Z->5:x,y,z Nqo5-like Interaction Interface Pymol
e3iam71 3:X,Y,Z->7:x,y,z Frataxin-like Interaction Interface Pymol
e3iam45 3:X,Y,Z->4:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3iam91 3:X,Y,Z->9:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol
e3iam22 3:x,y,z->2:X,Y,Z NQO2 helical bundle domain Interaction Interface Pymol