Domain ID e3izbY1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_S28e
UID: 000141501
Type: Automatic domain
Parent: e1ny4A1
Range: Y:1-60
PDB: 3izb
PDB Description:
Hsap BLAST neighbor: P62857
Species:

Structure of domain e3izbY1

Domains in the same chain:

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e3izbY1 Y:1-60 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3izba1 a:1-319 beta-propeller-like beta-propeller 7-bladed
e3izbB2 B:12-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3izbB1 B:92-215 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3izbD4 D:43-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3izbD3 D:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3izbD5 D:176-242 SH3 SH3 SH3
e3izbF1 F:27-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3izbH1 H:1-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3izbH2 H:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3izbJ1 J:9-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3izbK1 K:19-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3izbL1 L:1-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3izbN1 N:9-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3izbO1 O:31-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e3izbO2 O:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3izbS1 S:1-144 HTH HTH winged
e3izbU1 U:1-96 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3izbV1 V:24-108 HTH HTH winged
e3izbX1 X:29-80 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3izbY1 Y:1-60 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e3izbY1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3izbF1 Y:X,Y,Z->F:x,y,z Ribosomal protein S7 Interaction Interface Pymol
e3izbK1 Y:X,Y,Z->K:x,y,z Ribonuclease H-like Interaction Interface Pymol