Domain ID e3izvO1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 000415518
Type: Automatic domain
Parent: e2uubK1
Range: O:1-128
PDB: 3izv
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e3izvO1

Domains in the same chain:

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e3izvO1 O:1-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3izvC3 C:1-202 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3izvC1 C:203-298 cradle loop barrel RIFT-related Alanine racemase-C
e3izvC2 C:299-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3izvG1 G:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3izvG2 G:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3izvI5 I:1-75 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3izvI6 I:76-166 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3izvJ1 J:1-135 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3izvK1 K:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3izvL1 L:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3izvL2 L:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3izvN1 N:1-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3izvO1 O:1-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3izvP1 P:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3izvR1 R:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3izvS1 S:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3izvT1 T:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3izvV1 V:1-74 HTH HTH tri-helical
e3izvX1 X:1-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3izvY1 Y:0-69 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21

Structural contacts of domain e3izvO1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3izvY1 O:x,y,z->Y:X,Y,Z 30S ribosomal protein S21 Interaction Interface Pymol
e3izvV1 O:x,y,z->V:X,Y,Z HTH Interaction Interface Pymol
e3izvK1 O:X,Y,Z->K:x,y,z Ribosomal protein S7 Interaction Interface Pymol