Domain ID e3j18N1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_S14
UID: 000149786
Type: Automatic domain
Parent: e2qalN1
Range: N:1-101
PDB: 3j18
PDB Description:
Hsap BLAST neighbor: O60783
Species:

Structure of domain e3j18N1

Domains in the same chain:

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e3j18N1 N:1-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e3j18C1 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j18C2 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j18E2 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j18E1 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j18F1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3j18G1 G:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j18H1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j18H2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j18J1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j18K1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j18L1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j18N1 N:1-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j18O1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j18P1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3j18R1 R:19-73 HTH HTH tri-helical
e3j18T1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3j18W1 W:1-123 OB-fold Small protein B (SmpB) Small protein B (SmpB)
e3j18Y9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j18Y7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e3j18Y8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e3j18Y10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j18Y6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e3j18N1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j18C1 N:X,Y,Z->C:x,y,z KH-domains Interaction Interface Pymol
e3j18J1 N:X,Y,Z->J:x,y,z Ribosomal protein S10 Interaction Interface Pymol