Domain ID e3j1pC2

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  • A: beta barrels
  • X: cradle loop barrel
  • H: Capsid protein protrusion (P) domain
  • T: Capsid protein protrusion (P) domain
  • F: Unmapped domains
UID: 001696123
Type: Automatic domain
Parent: e3j1pA3
Range: C:292-446
PDB: 3j1p
PDB Description: Major capsid protein VP60
UniProt: F5BXG7
Species: Rabbit hemorrhagic disease virus

Structure of domain e3j1pC2

Domains in the same chain:

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e3j1pC1 C:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pC3 C:229-291,C:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pC2 C:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e3j1pA2 A:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pA1 A:229-291,A:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pA3 A:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pB1 B:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pB2 B:229-291,B:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pB3 B:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pC1 C:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pC3 C:229-291,C:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pC2 C:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e3j1pC2 of H-group "Capsid protein protrusion (P) domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j1pB3 C:X,Y,Z->B:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol
e3j1pB2 C:X,Y,Z->B:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol