ECOD: domain e3j1pB1

Domain ID e3j1pB1

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Calici_coat

UID:	001696119
Type:	Automatic domain
Parent:	e2gh8A1
Range:	B:45-228
PDB:	3j1p
PDB Description:	Major capsid protein VP60
UniProt:	F5BXG7
Species:	Rabbit hemorrhagic disease virus

Domains in the same chain:

Download Pymol

e3j1pB1	B:45-228	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pB2	B:229-291,B:447-569	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pB3	B:292-446	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Domains in the same PDB:

e3j1pA2	A:45-228	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pA1	A:229-291,A:447-569	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pA3	A:292-446	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pB1	B:45-228	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pB2	B:229-291,B:447-569	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pB3	B:292-446	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pC1	C:45-228	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pC3	C:229-291,C:447-569	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e3j1pC2	C:292-446	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Structural contacts of domain e3j1pB1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3j1pA2	B:X,Y,Z->A:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e3j1pC3	B:x,y,z->C:X,Y,Z	Capsid protein protrusion (P) domain	Interaction Interface Pymol
e3j1pC1	B:x,y,z->C:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol