Domain ID e3j1pB1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Calici_coat
UID: 001696119
Type: Automatic domain
Parent: e2gh8A1
Range: B:45-228
PDB: 3j1p
PDB Description: Major capsid protein VP60
UniProt: F5BXG7
Species: Rabbit hemorrhagic disease virus

Structure of domain e3j1pB1

Domains in the same chain:

e3j1pB1 B:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pB2 B:229-291,B:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pB3 B:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e3j1pA2 A:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pA1 A:229-291,A:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pA3 A:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pB1 B:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pB2 B:229-291,B:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pB3 B:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pC1 C:45-228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3j1pC3 C:229-291,C:447-569 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e3j1pC2 C:292-446 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e3j1pB1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j1pA2 B:X,Y,Z->A:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e3j1pC3 B:x,y,z->C:X,Y,Z Capsid protein protrusion (P) domain Interaction Interface Pymol
e3j1pC1 B:x,y,z->C:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol