Domain ID e3j20E6

Download files:
  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: S4,RS4NT
UID: 001272152
Type: Automatic and representative domain
Range: E:3-117
PDB: 3j20
PDB Description:
Hsap BLAST neighbor: P22090
Species:

Structure of domain e3j20E6

Domains in the same chain:

Download Pymol

e3j20E6 E:3-117 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j20E7 E:118-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j20E8 E:180-243 SH3 SH3 SH3

Domains in the same PDB:

e3j2031 3:1-123 Bacillus chorismate mutase-like L30e-like L30e-like
e3j20A2 A:9-95 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e3j20A1 A:96-198 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e3j20C3 C:1-93 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j20C1 C:86-186 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j20E6 E:3-117 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j20E7 E:118-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j20E8 E:180-243 SH3 SH3 SH3
e3j20G1 G:1-125 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j20H1 H:1-215 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j20I1 I:2-63 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j20I2 I:64-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j20J1 J:1-127 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j20L1 L:1-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j20M1 M:5-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j20N1 N:3-147 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j20P1 P:1-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j20Q2 Q:1-89 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e3j20Q1 Q:90-158 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j20S1 S:1-67 HTH HTH FF domain
e3j20U1 U:1-144 HTH HTH winged
e3j20V1 V:1-99 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j20W1 W:1-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j20X1 X:1-71 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j20Y1 Y:1-50 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3j20E6 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j20V1 E:X,Y,Z->V:x,y,z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol