Domain ID e3j38D1

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  • A: a+b two layers
  • X: T-fold
  • H: Ribosomal protein S3-C
  • T: Ribosomal protein S3-C
  • F: Ribosomal_S3_C
UID: 000259602
Type: Automatic domain
Parent: e2uubC1
Range: D:94-229
PDB: 3j38
PDB Description:
Hsap BLAST neighbor: P23396
Species:

Structure of domain e3j38D1

Domains in the same chain:

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e3j38D3 D:3-101 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j38D1 D:94-229 T-fold Ribosomal protein S3-C Ribosomal protein S3-C

Domains in the same PDB:

e3j38a1 a:2-108 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j38b1 b:1-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j38B2 B:17-116 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e3j38B1 B:117-236 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e3j38c1 c:4-65 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j38d1 d:5-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j38D3 D:3-101 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j38D1 D:94-229 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j38E3 E:1-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j38E2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j38E1 E:176-261 SH3 SH3 SH3
e3j38f1 f:77-156 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j38F1 F:39-228 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j38g1 g:1-318 beta-propeller-like beta-propeller 7-bladed
e3j38G1 G:1-231 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j38H2 H:1-109 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3j38H1 H:110-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3j38I1 I:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j38K1 K:1-95 HTH HTH winged
e3j38M1 M:21-139 Bacillus chorismate mutase-like L30e-like L30e-like
e3j38N2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e3j38N1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j38O1 O:18-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j38R1 R:1-120 HTH HTH FF domain
e3j38T1 T:1-154 HTH HTH winged
e3j38U1 U:18-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j38W1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j38W2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j38X1 X:1-143 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j38Y1 Y:4-129 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j38z7 z:4-327 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j38z1 z:328-465 cradle loop barrel RIFT-related Alanine racemase-C
e3j38z8 z:466-544 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e3j38z6 z:545-709 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j38z9 z:710-823 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e3j38Z1 Z:40-113 HTH HTH winged

Structural contacts of domain e3j38D1 of H-group "Ribosomal protein S3-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j38g1 D:X,Y,Z->g:x,y,z beta-propeller Interaction Interface Pymol
e3j38R1 D:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol
e3j38d1 D:X,Y,Z->d:x,y,z LIM domain-like Interaction Interface Pymol