Domain ID e3j3bD1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_L18_c,Ribosomal_L5e
UID: 000259712
Type: Automatic domain
Parent: e8p60LD01
Range: D:9-297
PDB: 3j3b
PDB Description:
Hsap BLAST neighbor: P46777
Species:

Structure of domain e3j3bD1

Domains in the same chain:

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e3j3bD1 D:9-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3j3bA6 A:2-96 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j3bA5 A:97-256 SH3 SH3 SH3
e3j3bB1 B:2-398 cradle loop barrel RIFT-related Alanine racemase-C
e3j3bc1 c:10-109 Bacillus chorismate mutase-like L30e-like L30e-like
e3j3bd1 d:12-124 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3j3bD1 D:9-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j3be1 e:1-133 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e3j3bE1 E:27-288 SH3 SH3 SH3
e3j3bf1 f:2-110 cradle loop barrel RIFT-related Alanine racemase-C
e3j3bF1 F:20-248 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3j3bG1 G:21-266 Bacillus chorismate mutase-like L30e-like L30e-like
e3j3bh1 h:1-123 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j3bH1 H:1-87 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j3bH2 H:88-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j3bI1 I:2-214 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3j3bj1 j:2-91 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j3bJ1 J:9-176 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j3bK3 K:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j3bK1 K:74-163 HTH HTH Ribosomal protein L11, C-terminal domain
e3j3bl1 l:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e3j3bm1 m:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j3bM1 M:1-139 SH3 SH3 SH3
e3j3bn1 n:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e3j3bN1 N:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j3bo1 o:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j3bO1 O:2-203 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j3bp1 p:3-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j3bP1 P:2-153 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j3bq2 q:110-182 Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P)
e3j3bQ1 Q:1-188 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3j3bR2 R:1-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e3j3bR1 R:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e3j3bS2 S:2-72 GP2-like RplX-like RplX-like
e3j3bS1 S:73-176 GP2-like RplX-like RplX-like
e3j3bT1 T:2-160 SH3 SH3 SH3
e3j3bV1 V:8-140 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j3bW1 W:1-124 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j3bX1 X:36-156 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j3bY1 Y:2-134 SH3 SH3 SH3
e3j3bz1 z:1-57,z:154-217 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j3bz2 z:58-153 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3j3bZ1 Z:2-136 SH3 SH3 SH3

Structural contacts of domain e3j3bD1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j3bT1 D:x,y,z->T:X,Y,Z SH3 Interaction Interface Pymol
e3j3bI1 D:X,Y,Z->I:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3j3bJ1 D:x,y,z->J:X,Y,Z Ribosomal protein L5 Interaction Interface Pymol