Domain ID e3j5fL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001110341
Type: Automatic domain
Parent: e2uubL1
Range: L:1-123
PDB: 3j5f
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3j5fL1

Domains in the same chain:

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e3j5fL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3j5fC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j5fC1 C:106-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j5fE2 E:8-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j5fE1 E:77-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j5fF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3j5fG1 G:1-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j5fH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j5fH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j5fJ1 J:4-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j5fK1 K:11-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5fL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5fN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j5fO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j5fP1 P:1-81 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3j5fR1 R:18-74 HTH HTH tri-helical
e3j5fT1 T:1-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3j5fU1 U:2-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21

Structural contacts of domain e3j5fL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j5fH2 L:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol