Domain ID e3j5nL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001124374
Type: Automatic domain
Parent: e2uubL1
Range: L:2-124
PDB: 3j5n
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3j5nL1

Domains in the same chain:

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e3j5nL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3j5nC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j5nC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j5nE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j5nE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j5nF1 F:1-102 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3j5nG1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j5nH1 H:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j5nH2 H:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j5nJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j5nK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5nL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5nN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j5nO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j5nP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3j5nR1 R:20-74 HTH HTH tri-helical
e3j5nT1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3j5nU1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e3j5nY14 Y:2-37,Y:66-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j5nY12 Y:291-408 cradle loop barrel RIFT-related Alanine racemase-C
e3j5nY13 Y:409-482 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e3j5nY15 Y:483-596 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j5nY11 Y:597-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e3j5nL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j5nY13 L:x,y,z->Y:X,Y,Z EF-G C-terminal domain-like Interaction Interface Pymol
e3j5nH2 L:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol