Domain ID e3j6vO1

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  • A: alpha arrays
  • X: S15/NS1 RNA-binding domain
  • H: S15/NS1 RNA-binding domain
  • T: S15/NS1 RNA-binding domain
  • F: Ribosomal_S15
UID: 001298736
Type: Manual and representative domain
Range: O:54-256
PDB: 3j6v
PDB Description:
UniProt: E1BBB4
Hsap BLAST neighbor: P82914
Species: Bos taurus

Structure of domain e3j6vO1

Domains in the same chain:

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e3j6vO1 O:54-256 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain

Domains in the same PDB:

e3j6vB1 B:50-293 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e3j6vE1 E:89-215 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e3j6vE2 E:216-286 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j6vE3 E:287-430 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j6vF1 F:1-124 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3j6vG1 G:39-242 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j6vI1 I:68-396 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j6vJ1 J:1-201 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j6vK1 K:25-197 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j6vL1 L:31-139 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j6vN1 N:1-128 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j6vO1 O:54-256 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j6vP1 P:16-135 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3j6vQ1 Q:1-130 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j6vR1 R:39-196 HTH HTH tri-helical
e3j6vU1 U:1-87 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e3j6vV1 V:44-167 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)

Structural contacts of domain e3j6vO1 of H-group "S15/NS1 RNA-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j6vF1 O:X,Y,Z->F:x,y,z Ribosomal protein S6 Interaction Interface Pymol
e3j6vQ1 O:x,y,z->Q:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e3j6vR1 O:x,y,z->R:X,Y,Z HTH Interaction Interface Pymol