ECOD: domain e3k57A1

Domain ID e3k57A1

A: alpha bundles
X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
F: Unmapped domains

UID:	001758739
Type:	Automatic domain
Parent:	e1q8iA3
Range:	A:637-780
PDB:	3k57
PDB Description:	DNA polymerase II
UniProt:	P21189
Species:

Domains in the same chain:

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e3k57A6	A:-1-39,A:109-148	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3k57A2	A:41-108	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e3k57A5	A:149-367	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3k57A3	A:372-464,A:508-636	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3k57A4	A:465-507	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k57A1	A:637-780	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3k57A6	A:-1-39,A:109-148	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3k57A2	A:41-108	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e3k57A5	A:149-367	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3k57A3	A:372-464,A:508-636	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3k57A4	A:465-507	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k57A1	A:637-780	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3k57A1 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3k57A3	A:-X+1/2,-Y,Z-1/2->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3k57A3	A:X-1,Y,Z->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3k57A2	A:X-1,Y,Z->A:x,y,z	Family B DNA polymerase insertion domain	Interaction Interface Pymol
e3k57A2	A:X-1,Y,Z->A:x,y,z	Family B DNA polymerase insertion domain	Interaction Interface Pymol
e3k57A3	A:X-1,Y,Z->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3k57A3	A:X-1/2,-Y+1/2,-Z->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3k57A3	A:x,y,z->A:-X+1,Y-1/2,-Z+1/2	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol