Domain ID e3k5nB5

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 001814013
Type: Automatic domain
Parent: e1q8iA3
Range: B:637-769
PDB: 3k5n
PDB Description: DNA polymerase II
UniProt: P21189
Species: Escherichia coli

Structure of domain e3k5nB5

Domains in the same chain:

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e3k5nB1 B:0-40,B:110-124,B:146-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k5nB3 B:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k5nB6 B:150-366 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5nB4 B:372-464,B:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5nB7 B:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5nB5 B:637-769 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3k5nA6 A:114-147,A:149-368 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5nA1 A:369-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5nA4 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5nA3 A:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e3k5nB1 B:0-40,B:110-124,B:146-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k5nB3 B:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k5nB6 B:150-366 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5nB4 B:372-464,B:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5nB7 B:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5nB5 B:637-769 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3k5nB5 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1q8iA3 B:x,y,z->A:-X,Y-1/2,-Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol