Domain ID e3k6sB28

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  • A: few secondary structure elements
  • X: EGF-like
  • H: EGF-related
  • T: EGF/Laminin
  • F: Unmapped domains
UID: 001204565
Type: Automatic domain
Parent: e2p28B2
Range: B:467-513
Ligands: NAG
PDB: 3k6s
PDB Description: Integrin beta-2
UniProt: P05107
Hsap BLAST neighbor: P05107
Species: Homo sapiens

Structure of domain e3k6sB28

Domains in the same chain:

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e3k6sB3 B:1-59 Trefoil/Plexin domain-like Trefoil/Plexin domain-like Trefoil/Plexin domain-like
e3k6sB27 B:60-101,B:341-424 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sB26 B:100-344 HAD domain-like HAD domain-related vWA-like
e3k6sB29 B:425-466 EGF-like EGF-related EGF/Laminin
e3k6sB28 B:467-513 EGF-like EGF-related EGF/Laminin
e3k6sB30 B:514-554 EGF-like EGF-related EGF/Laminin
e3k6sB5 B:555-597 EGF-like EGF-related EGF/Laminin
e3k6sB31 B:598-674 Integrin beta tail domain Integrin beta tail domain Integrin beta tail domain

Domains in the same PDB:

e3k6sA2 A:1-142,A:317-598 beta-propeller-like beta-propeller 7-bladed
e3k6sA1 A:129-317 HAD domain-like HAD domain-related vWA-like
e3k6sA3 A:598-754 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sA5 A:755-901 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sA4 A:901-1082 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sB3 B:1-59 Trefoil/Plexin domain-like Trefoil/Plexin domain-like Trefoil/Plexin domain-like
e3k6sB27 B:60-101,B:341-424 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sB26 B:100-344 HAD domain-like HAD domain-related vWA-like
e3k6sB29 B:425-466 EGF-like EGF-related EGF/Laminin
e3k6sB28 B:467-513 EGF-like EGF-related EGF/Laminin
e3k6sB30 B:514-554 EGF-like EGF-related EGF/Laminin
e3k6sB5 B:555-597 EGF-like EGF-related EGF/Laminin
e3k6sB31 B:598-674 Integrin beta tail domain Integrin beta tail domain Integrin beta tail domain
e3k6sC1 C:1-128,C:326-598 beta-propeller-like beta-propeller 7-bladed
e3k6sC3 C:598-754 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sC8 C:755-903 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sC7 C:904-1082 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sD3 D:1-59 Trefoil/Plexin domain-like Trefoil/Plexin domain-like Trefoil/Plexin domain-like
e3k6sD16 D:60-101,D:341-424 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sD15 D:100-344 HAD domain-like HAD domain-related vWA-like
e3k6sD18 D:425-466 EGF-like EGF-related EGF/Laminin
e3k6sD17 D:467-513 EGF-like EGF-related EGF/Laminin
e3k6sD19 D:514-554 EGF-like EGF-related EGF/Laminin
e3k6sD21 D:555-597 EGF-like EGF-related EGF/Laminin
e3k6sD20 D:598-674 Integrin beta tail domain Integrin beta tail domain Integrin beta tail domain
e3k6sE1 E:1-128,E:327-598 beta-propeller-like beta-propeller 7-bladed
e3k6sE3 E:598-754 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sE8 E:755-903 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sE7 E:904-1082 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sF3 F:1-59 Trefoil/Plexin domain-like Trefoil/Plexin domain-like Trefoil/Plexin domain-like
e3k6sF19 F:60-101,F:341-424 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sF18 F:100-344 HAD domain-like HAD domain-related vWA-like
e3k6sF21 F:425-466 EGF-like EGF-related EGF/Laminin
e3k6sF20 F:467-513 EGF-like EGF-related EGF/Laminin
e3k6sF22 F:514-554 EGF-like EGF-related EGF/Laminin
e3k6sF5 F:555-597 EGF-like EGF-related EGF/Laminin
e3k6sF4 F:598-674 Integrin beta tail domain Integrin beta tail domain Integrin beta tail domain
e3k6sG1 G:1-128,G:326-598 beta-propeller-like beta-propeller 7-bladed
e3k6sG3 G:598-754 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sG8 G:755-903 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sG7 G:904-1082 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sH3 H:1-59 Trefoil/Plexin domain-like Trefoil/Plexin domain-like Trefoil/Plexin domain-like
e3k6sH19 H:60-101,H:341-424 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sH18 H:100-344 HAD domain-like HAD domain-related vWA-like
e3k6sH21 H:425-466 EGF-like EGF-related EGF/Laminin
e3k6sH20 H:467-513 EGF-like EGF-related EGF/Laminin
e3k6sH22 H:514-554 EGF-like EGF-related EGF/Laminin
e3k6sH5 H:555-597 EGF-like EGF-related EGF/Laminin
e3k6sH4 H:598-674 Integrin beta tail domain Integrin beta tail domain Integrin beta tail domain

Structural contacts of domain e3k6sB28 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k6sA3 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3k6sA5 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol