ECOD: domain e3k6sF5

Domain ID e3k6sF5

A: few secondary structure elements
X: EGF-like
H: EGF-related
T: EGF/Laminin
F: EGF_2

UID:	000992399
Type:	Automatic domain
Parent:	e2gy5A6
Range:	F:555-597
PDB:	3k6s
PDB Description:	Integrin beta-2
UniProt:	P05107
Hsap BLAST neighbor:	P05107
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3k6sF3	F:1-59	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e3k6sF19	F:60-101,F:341-424	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sF18	F:100-344	HAD domain-like	HAD domain-related	vWA-like
e3k6sF21	F:425-466	EGF-like	EGF-related	EGF/Laminin
e3k6sF20	F:467-513	EGF-like	EGF-related	EGF/Laminin
e3k6sF22	F:514-554	EGF-like	EGF-related	EGF/Laminin
e3k6sF5	F:555-597	EGF-like	EGF-related	EGF/Laminin
e3k6sF4	F:598-674	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain

Domains in the same PDB:

e3k6sA2	A:1-142,A:317-598	beta-propeller-like	beta-propeller	7-bladed
e3k6sA1	A:129-317	HAD domain-like	HAD domain-related	vWA-like
e3k6sA3	A:598-754	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sA5	A:755-901	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sA4	A:901-1082	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sB3	B:1-59	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e3k6sB27	B:60-101,B:341-424	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sB26	B:100-344	HAD domain-like	HAD domain-related	vWA-like
e3k6sB29	B:425-466	EGF-like	EGF-related	EGF/Laminin
e3k6sB28	B:467-513	EGF-like	EGF-related	EGF/Laminin
e3k6sB30	B:514-554	EGF-like	EGF-related	EGF/Laminin
e3k6sB5	B:555-597	EGF-like	EGF-related	EGF/Laminin
e3k6sB31	B:598-674	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain
e3k6sC1	C:1-128,C:326-598	beta-propeller-like	beta-propeller	7-bladed
e3k6sC3	C:598-754	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sC8	C:755-903	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sC7	C:904-1082	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sD3	D:1-59	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e3k6sD16	D:60-101,D:341-424	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sD15	D:100-344	HAD domain-like	HAD domain-related	vWA-like
e3k6sD18	D:425-466	EGF-like	EGF-related	EGF/Laminin
e3k6sD17	D:467-513	EGF-like	EGF-related	EGF/Laminin
e3k6sD19	D:514-554	EGF-like	EGF-related	EGF/Laminin
e3k6sD21	D:555-597	EGF-like	EGF-related	EGF/Laminin
e3k6sD20	D:598-674	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain
e3k6sE1	E:1-128,E:327-598	beta-propeller-like	beta-propeller	7-bladed
e3k6sE3	E:598-754	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sE8	E:755-903	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sE7	E:904-1082	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sF3	F:1-59	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e3k6sF19	F:60-101,F:341-424	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sF18	F:100-344	HAD domain-like	HAD domain-related	vWA-like
e3k6sF21	F:425-466	EGF-like	EGF-related	EGF/Laminin
e3k6sF20	F:467-513	EGF-like	EGF-related	EGF/Laminin
e3k6sF22	F:514-554	EGF-like	EGF-related	EGF/Laminin
e3k6sF5	F:555-597	EGF-like	EGF-related	EGF/Laminin
e3k6sF4	F:598-674	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain
e3k6sG1	G:1-128,G:326-598	beta-propeller-like	beta-propeller	7-bladed
e3k6sG3	G:598-754	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sG8	G:755-903	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sG7	G:904-1082	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sH3	H:1-59	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e3k6sH19	H:60-101,H:341-424	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k6sH18	H:100-344	HAD domain-like	HAD domain-related	vWA-like
e3k6sH21	H:425-466	EGF-like	EGF-related	EGF/Laminin
e3k6sH20	H:467-513	EGF-like	EGF-related	EGF/Laminin
e3k6sH22	H:514-554	EGF-like	EGF-related	EGF/Laminin
e3k6sH5	H:555-597	EGF-like	EGF-related	EGF/Laminin
e3k6sH4	H:598-674	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain

Structural contacts of domain e3k6sF5 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3k6sE1	F:x,y,z->E:X,Y,Z	beta-propeller	Interaction Interface Pymol
e3k6sE7	F:x,y,z->E:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol