Domain ID e3khgB5

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: IMS
UID: 001256243
Type: Automatic domain
Parent: e1t3nA4
Range: B:1001-1021,B:1077-1177
Ligands: CA DGT
PDB: 3khg
PDB Description: DNA polymerase IV
UniProt: Q97W02
Hsap BLAST neighbor: Q9UBZ9
Species:

Structure of domain e3khgB5

Domains in the same chain:

Download Pymol

e3khgB5 B:1001-1021,B:1077-1177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgB7 B:1022-1076 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgB6 B:1178-1240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgB2 B:1241-1341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3khgA5 A:1-21,A:77-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgA7 A:22-76 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgA6 A:178-240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3khgB5 B:1001-1021,B:1077-1177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgB7 B:1022-1076 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgB6 B:1178-1240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgB2 B:1241-1341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3khgB5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3khgA5 B:-X,Y-1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3khgA6 B:-X,Y-1/2,-Z+1->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol