Domain ID e3khgB6

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH
UID: 001256245
Type: Automatic domain
Parent: e1jx4A1
Range: B:1178-1240
Ligands: CA
PDB: 3khg
PDB Description: DNA polymerase IV
UniProt: Q97W02
Species:

Structure of domain e3khgB6

Domains in the same chain:

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e3khgB5 B:1001-1021,B:1077-1177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgB7 B:1022-1076 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgB6 B:1178-1240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgB2 B:1241-1341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3khgA5 A:1-21,A:77-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgA7 A:22-76 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgA6 A:178-240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3khgB5 B:1001-1021,B:1077-1177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khgB7 B:1022-1076 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khgB6 B:1178-1240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khgB2 B:1241-1341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3khgB6 of H-group "SAM/DNA-glycosylase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3khgA6 B:-X,Y-1/2,-Z+1->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol