Domain ID e3kirU1

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  • A: alpha arrays
  • X: PABP domain-like
  • H: Ribosomal protein L20
  • T: Ribosomal protein L20
  • F: Ribosomal_L20
UID: 000379404
Type: Automatic domain
Parent: e4v19U1
Range: U:2-118
Ligands: MG
PDB: 3kir
PDB Description:
Hsap BLAST neighbor: Q9BYC9
Species:

Structure of domain e3kirU1

Domains in the same chain:

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e3kirU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20

Domains in the same PDB:

e3kir01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3kir11 1:3-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3kir21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3kir31 3:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3kir41 4:1-57 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3kir51 5:2-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3kir71 7:1-47 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3kir81 8:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3kir91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3kirC1 C:2-57,C:166-229 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3kirD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3kirD2 D:127-272 SH3 SH3 SH3
e3kirF1 F:1-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3kirG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3kirH1 H:7-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3kirH2 H:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3kirI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3kirI1 I:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3kirJ2 J:4-133 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3kirN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3kirO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3kirR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3kirU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3kirV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3kirW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3kirX1 X:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3kirY1 Y:2-101 SH3 SH3 SH3
e3kirZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3kirZ2 Z:93-186 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3kirU1 of H-group "Ribosomal protein L20":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kirV1 U:X,Y,Z->V:x,y,z Ribosomal protein L21p Interaction Interface Pymol
e3kirN1 U:x,y,z->N:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol